BAP,
On the 3-D thing - I'm not sure if it takes a computer re-boot or just shutting down folding and restarting it that's been kicking the GPU back into 3D - ArVee or Micro can help answer that. From past conversations, I'm not sure we know what causes the video cards to kick out of 3D.
On the other question - what to adjust - about the middle of the Precision X screen is a slider called "GPU Clock Offset" - it's a little on the sensitive side - so very carefully bump it up 2-3 Mhz. If it runs good there and doesn't error out - bump it up 2-3 more. My card was already overclocked - so I had to go very slowly like that - if your card isn't already overclocked - you might be able to bump it up 5-10 Mhz increments. Go too far, and it will error out and shut down folding on the card.
ArVee - Micro - you guys are the experts on overclocking - jump in here.
Sun :-)